Variant report

Variant	rs3851188
Chromosome Location	chr11:85931503-85931504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1452139	0.90[YRI][hapmap]
rs17210259	1.00[AFR][1000 genomes]
rs17817659	1.00[AFR][1000 genomes]
rs2374699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2374700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2374701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3851185	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3851187	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7116441	0.90[YRI][hapmap]
rs7123456	0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs7127311	0.92[YRI][hapmap]
rs7128001	0.87[AFR][1000 genomes]
rs7128483	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs7128843	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931056	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs7938966	0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7943278	0.83[YRI][hapmap]
rs7952593	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85929000-85932200	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:85929400-85932200	Enhancers	Primary B cells from cord blood	blood
3	chr11:85929600-85933000	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:85930000-85932000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr11:85930000-85932800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:85930000-85932800	Weak transcription	HSMMtube	muscle
7	chr11:85930000-85933200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:85930000-85937600	Weak transcription	Ovary	ovary
9	chr11:85930000-85939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:85930200-85931600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:85930200-85931600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:85930200-85931800	Weak transcription	K562	blood
13	chr11:85930800-85931600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:85931400-85932000	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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