Variant report

Variant	rs7128843
Chromosome Location	chr11:85941753-85941754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1452139	1.00[YRI][hapmap]
rs17210259	1.00[AFR][1000 genomes]
rs17817659	1.00[AFR][1000 genomes]
rs2374699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2374700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2374701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3851185	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3851187	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3851188	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116441	1.00[YRI][hapmap]
rs7123456	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7127311	1.00[YRI][hapmap]
rs7128001	0.87[AFR][1000 genomes]
rs7128483	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7931056	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7938966	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7943278	0.91[YRI][hapmap]
rs7952593	0.81[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85939400-85942400	Enhancers	Hela-S3	cervix
2	chr11:85939600-85942600	Enhancers	HMEC	breast
3	chr11:85939600-85942800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:85939800-85942000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:85939800-85942400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:85939800-85942600	Enhancers	NHEK	skin
7	chr11:85940000-85942600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:85941000-85943600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:85941200-85941800	Enhancers	K562	blood
10	chr11:85941200-85942400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:85941200-85942400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:85941200-85942600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:85941400-85942800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:85941600-85942400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:85941600-85942400	Enhancers	HSMM	muscle
16	chr11:85941600-85942400	Enhancers	Osteobl	bone
17	chr11:85941600-85945800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:85941600-85955000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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