Variant report

Variant	rs7943278
Chromosome Location	chr11:86052756-86052757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:86052640-86052790	HPAF	blood vessel:	n/a	n/a

Variant related genes	Relation type
C11orf73	TF binding region

rs_ID	r²[population]
rs1452139	1.00[YRI][hapmap]
rs3851188	0.83[YRI][hapmap]
rs6592281	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116441	1.00[YRI][hapmap]
rs7123456	0.91[YRI][hapmap]
rs7127311	0.92[YRI][hapmap]
rs7128483	0.92[YRI][hapmap]
rs7128843	0.91[YRI][hapmap]
rs7927219	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931056	0.92[YRI][hapmap]
rs7937132	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938966	0.83[YRI][hapmap]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
3	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
4	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
5	chr11:86014800-86058600	Weak transcription	NHLF	lung
6	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
9	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
10	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
12	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
13	chr11:86025200-86057800	Weak transcription	HepG2	liver
14	chr11:86028400-86059200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:86032600-86057600	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:86033600-86057000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:86035600-86058800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:86038000-86059800	Weak transcription	NH-A	brain
21	chr11:86040800-86060800	Weak transcription	Brain Angular Gyrus	brain
22	chr11:86042000-86057600	Weak transcription	NHDF-Ad	bronchial
23	chr11:86042200-86052800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:86047600-86057400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:86047600-86059400	Weak transcription	NHEK	skin
26	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:86048800-86057400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:86049400-86057600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:86049600-86056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:86049600-86057400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:86049600-86057400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:86049600-86057400	Weak transcription	Gastric	stomach
35	chr11:86049600-86057400	Weak transcription	Lung	lung
36	chr11:86049600-86057400	Weak transcription	Thymus	Thymus
37	chr11:86049600-86057400	Weak transcription	Spleen	Spleen
38	chr11:86049600-86059000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr11:86049600-86059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:86049600-86059400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:86049600-86060800	Weak transcription	A549	lung
42	chr11:86049600-86062600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
44	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
46	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:86049800-86053400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:86049800-86055000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr11:86049800-86055400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:86049800-86055600	Weak transcription	K562	blood

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