Variant report

Variant	rs7123456
Chromosome Location	chr11:85947107-85947108
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1452139	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17210259	0.92[AFR][1000 genomes]
rs17817659	0.92[AFR][1000 genomes]
rs1901549	0.83[AFR][1000 genomes]
rs2374699	0.92[AFR][1000 genomes]
rs2374700	0.92[AFR][1000 genomes]
rs2374701	0.92[AFR][1000 genomes]
rs3851185	0.87[AFR][1000 genomes]
rs3851187	0.88[AFR][1000 genomes]
rs3851188	0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs6592277	0.85[AFR][1000 genomes]
rs7116441	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7126165	0.83[AFR][1000 genomes]
rs7127311	1.00[YRI][hapmap]
rs7128001	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128483	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7128843	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7931056	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7938966	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs7943278	0.91[YRI][hapmap]
rs7946689	0.85[AFR][1000 genomes]
rs7952593	0.81[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85941600-85955000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:85946000-85947200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:85946200-85949200	Enhancers	K562	blood
4	chr11:85946600-85947200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:85946800-85947200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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