Variant report

Variant	rs7126165
Chromosome Location	chr11:85995886-85995887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85993708..85996490-chr11:86003264..86007905,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ME3-1	chr11:85994954-85995893	ENSG00000247264

Variant related genes	Relation type
ENSG00000255222	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1452139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1901549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592277	0.91[AFR][1000 genomes]
rs7112457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123456	0.83[AFR][1000 genomes]
rs7128001	0.82[AFR][1000 genomes]
rs7128483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946689	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898055	chr11:85968623-86000757	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
2	chr11:85957800-85997200	Weak transcription	Colonic Mucosa	Colon
3	chr11:85957800-85999800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:85958400-85997200	Weak transcription	Brain Germinal Matrix	brain
5	chr11:85959200-85997600	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:85961000-85996000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:85961000-85997000	Weak transcription	Stomach Mucosa	stomach
8	chr11:85961600-85998000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:85974800-86000000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:85975000-86002600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:85984400-86002800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:85986000-85997200	Weak transcription	Pancreas	Pancrea
13	chr11:85986000-86002600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:85987400-85997600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:85988800-86000000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:85989200-85999800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:85989600-85998200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:85989600-86002800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:85989600-86002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:85989600-86003000	Weak transcription	NH-A	brain
21	chr11:85989800-85999200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:85990600-85998200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:85990600-86002400	Weak transcription	HepG2	liver
24	chr11:85990800-86002600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:85991000-85996400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:85991000-85997000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:85991000-85997000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:85991200-85997600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:85991200-85998000	Weak transcription	HUVEC	blood vessel
30	chr11:85991200-86002600	Weak transcription	Osteobl	bone
31	chr11:85991400-85998000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:85991400-85998200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:85991400-86002600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:85991400-86003200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:85991600-85998000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:85991600-86002600	Weak transcription	NHDF-Ad	bronchial
37	chr11:85991600-86002800	Weak transcription	Placenta	Placenta
38	chr11:85992200-85998200	Weak transcription	Primary B cells from cord blood	blood
39	chr11:85992200-86000800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:85992200-86003200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:85992400-85997600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:85994200-85998000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:85995000-85996000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:85995000-85996000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:85995000-85996000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:85995000-85996000	Strong transcription	Brain Angular Gyrus	brain
47	chr11:85995000-85996000	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:85995000-85996000	Strong transcription	Fetal Intestine Large	intestine
49	chr11:85995000-85996000	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:85995000-85996200	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links