Variant report

Variant	rs1927136
Chromosome Location	chr9:72789166-72789167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10114223	0.91[AFR][1000 genomes]
rs10116027	0.90[AFR][1000 genomes]
rs10116549	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10117899	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10125454	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10126027	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1012992	0.84[AFR][1000 genomes]
rs1012993	0.84[AFR][1000 genomes]
rs10732697	0.83[AFR][1000 genomes]
rs10746819	0.84[AFR][1000 genomes]
rs10780866	0.92[AFR][1000 genomes]
rs10780869	0.86[AFR][1000 genomes]
rs10780870	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780924	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs10868742	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10868800	1.00[CHB][hapmap]
rs10868808	0.88[YRI][hapmap]
rs1112937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11141917	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142348	1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[ASN][1000 genomes]
rs11142363	0.85[LWK][hapmap];0.96[YRI][hapmap]
rs11142364	1.00[CHB][hapmap]
rs11142365	0.85[EUR][1000 genomes]
rs11142367	1.00[YRI][hapmap]
rs11142368	0.95[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs11142370	0.96[YRI][hapmap]
rs11142372	1.00[CHB][hapmap]
rs11142373	0.85[LWK][hapmap];0.89[MEX][hapmap];0.96[YRI][hapmap]
rs11142375	0.85[ASN][1000 genomes]
rs11142377	1.00[CHB][hapmap]
rs11142379	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11142380	0.85[EUR][1000 genomes]
rs11142381	0.85[EUR][1000 genomes]
rs11521805	1.00[CHB][hapmap]
rs1180081	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1180083	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180084	0.82[YRI][hapmap]
rs1180086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180088	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180089	1.00[CHB][hapmap]
rs1180091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180099	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180100	1.00[CHB][hapmap]
rs1180101	0.96[YRI][hapmap]
rs1180102	0.81[LWK][hapmap]
rs1180104	0.95[LWK][hapmap];0.89[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs1180105	0.88[MEX][hapmap]
rs1180107	0.96[YRI][hapmap]
rs1180110	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs1180111	0.83[EUR][1000 genomes]
rs1180112	1.00[YRI][hapmap]
rs1180113	1.00[CHB][hapmap]
rs1180117	0.85[LWK][hapmap];0.95[YRI][hapmap]
rs1180118	1.00[YRI][hapmap]
rs1180119	1.00[CHB][hapmap]
rs1180122	0.96[YRI][hapmap]
rs1180124	0.95[YRI][hapmap]
rs1180126	1.00[YRI][hapmap]
rs1180127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180133	0.96[YRI][hapmap]
rs11998951	0.95[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap]
rs12006212	0.85[LWK][hapmap];0.89[MEX][hapmap];0.96[YRI][hapmap]
rs12156606	1.00[YRI][hapmap]
rs12236327	0.86[AFR][1000 genomes]
rs12377677	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12380844	1.00[YRI][hapmap]
rs17052678	1.00[CHB][hapmap]
rs1887451	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1887452	0.88[AFR][1000 genomes]
rs1927094	1.00[CHB][hapmap]
rs1927096	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927100	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927118	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927120	0.84[AFR][1000 genomes]
rs1927121	0.86[AFR][1000 genomes]
rs1927122	0.90[AFR][1000 genomes]
rs1927124	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927125	0.88[AFR][1000 genomes]
rs1927126	0.94[AFR][1000 genomes]
rs1927127	0.94[AFR][1000 genomes]
rs1927130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927140	0.91[AFR][1000 genomes]
rs1927144	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927146	1.00[CHB][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs1927148	0.81[ASW][hapmap]
rs1986067	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2026137	1.00[YRI][hapmap]
rs2148855	0.84[AFR][1000 genomes]
rs2148857	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148859	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148863	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2148866	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2148867	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148868	0.85[AFR][1000 genomes]
rs2182734	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182735	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182737	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182738	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182740	0.84[AFR][1000 genomes]
rs2182741	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2209781	0.89[AFR][1000 genomes]
rs2309632	0.90[AFR][1000 genomes]
rs2309634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2309636	0.84[AFR][1000 genomes]
rs2309644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2309645	1.00[CHB][hapmap]
rs2479033	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2768643	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2768646	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2773363	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2773366	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2871293	0.96[YRI][hapmap]
rs2871296	0.88[AFR][1000 genomes]
rs4322072	0.88[AFR][1000 genomes]
rs4384045	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4449855	0.85[LWK][hapmap];0.89[MEX][hapmap];0.96[YRI][hapmap]
rs4531114	0.94[AFR][1000 genomes]
rs4744986	0.86[AFR][1000 genomes]
rs4744993	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744999	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6560016	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6560018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66524845	0.89[ASN][1000 genomes]
rs66756859	0.96[ASN][1000 genomes]
rs68171482	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7019147	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7020447	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7024117	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7034322	0.95[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs7047789	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7853298	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7857292	0.88[AFR][1000 genomes]
rs7858988	0.85[LWK][hapmap];0.89[MEX][hapmap];0.96[YRI][hapmap]
rs7860729	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7869429	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs943534	0.96[ASN][1000 genomes]
rs943535	1.00[CHB][hapmap]
rs943536	0.85[LWK][hapmap];0.89[MEX][hapmap];0.96[YRI][hapmap]
rs943539	0.87[AFR][1000 genomes]
rs943540	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv968579	chr9:72787163-72791525	Weak transcription Strong transcription Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72741600-72789400	Weak transcription	Spleen	Spleen
2	chr9:72759600-72800000	Weak transcription	Right Ventricle	heart
3	chr9:72759800-72792200	Weak transcription	HMEC	breast
4	chr9:72775200-72800000	Weak transcription	Esophagus	oesophagus
5	chr9:72776800-72791800	Weak transcription	Fetal Lung	lung
6	chr9:72777000-72792400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:72777400-72789400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:72777800-72800000	Weak transcription	Fetal Stomach	stomach
9	chr9:72779200-72789600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:72779200-72792400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:72780400-72796000	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:72780400-72800000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:72780600-72791400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:72780600-72801400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:72780600-72803600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:72780800-72791600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:72783000-72792000	Strong transcription	HSMMtube	muscle
18	chr9:72783600-72789800	Strong transcription	Colon Smooth Muscle	Colon
19	chr9:72783600-72792400	Weak transcription	Pancreas	Pancrea
20	chr9:72783600-72793600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:72783600-72794000	Strong transcription	Stomach Smooth Muscle	stomach
22	chr9:72783800-72801600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:72784400-72793000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:72784600-72802000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:72785000-72791200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:72785200-72790400	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:72785600-72789400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:72785600-72794200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:72786000-72792200	Weak transcription	NH-A	brain
30	chr9:72786000-72792400	Weak transcription	Ovary	ovary
31	chr9:72786200-72792400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:72786400-72795400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:72786400-72800400	Weak transcription	Aorta	Aorta
34	chr9:72786600-72790600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:72786600-72792200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:72787800-72790000	Weak transcription	Adipose Nuclei	Adipose
37	chr9:72787800-72791600	Strong transcription	HSMM	muscle
38	chr9:72788200-72794200	Weak transcription	Lung	lung
39	chr9:72788200-72800200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links