Variant report

Variant	rs192890760
Chromosome Location	chr9:13278960-13278961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:55977919..55980808-chr9:13278471..13279995,2	MCF-7	breast:
2	chr9:13278089..13282078-chr9:14313109..14316114,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180891	Chromatin interaction
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3376897	chr9:13277977-13280925	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	esv3405883	chr9:13278702-13280900	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13277600-13279800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:13277800-13280000	Active TSS	Brain Anterior Caudate	brain
3	chr9:13277800-13280000	Active TSS	Colon Smooth Muscle	Colon
4	chr9:13277800-13280000	Active TSS	Fetal Brain Female	brain
5	chr9:13277800-13280000	Active TSS	A549	lung
6	chr9:13277800-13280000	Active TSS	Osteobl	bone
7	chr9:13277800-13280200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr9:13277800-13280200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr9:13277800-13280200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:13277800-13280200	Active TSS	Aorta	Aorta
11	chr9:13277800-13280200	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr9:13277800-13280200	Active TSS	NHLF	lung
13	chr9:13277800-13280400	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr9:13277800-13280400	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr9:13278000-13279000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:13278000-13279800	Active TSS	Primary hematopoietic stem cells	blood
17	chr9:13278000-13280000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:13278000-13280000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:13278000-13280000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:13278000-13280000	Active TSS	Brain Angular Gyrus	brain
21	chr9:13278000-13280000	Active TSS	Brain Germinal Matrix	brain
22	chr9:13278000-13280000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:13278000-13280000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
24	chr9:13278000-13280000	Active TSS	Fetal Kidney	kidney
25	chr9:13278000-13280000	Active TSS	HSMM	muscle
26	chr9:13278000-13280000	Active TSS	K562	blood
27	chr9:13278000-13280000	Active TSS	NHDF-Ad	bronchial
28	chr9:13278000-13280200	Active TSS	H1 Cell Line	embryonic stem cell
29	chr9:13278000-13280200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:13278000-13280200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:13278000-13280200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:13278000-13280200	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr9:13278000-13280200	Active TSS	Right Atrium	heart
34	chr9:13278000-13280200	Active TSS	Right Ventricle	heart
35	chr9:13278000-13280200	Active TSS	HSMMtube	muscle
36	chr9:13278000-13280400	Active TSS	Brain Cingulate Gyrus	brain
37	chr9:13278000-13280400	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr9:13278200-13279000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr9:13278200-13279000	Flanking Active TSS	Placenta	Placenta
40	chr9:13278200-13279800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:13278200-13279800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:13278200-13279800	Active TSS	Esophagus	oesophagus
43	chr9:13278200-13279800	Active TSS	Gastric	stomach
44	chr9:13278200-13279800	Bivalent/Poised TSS	Thymus	Thymus
45	chr9:13278200-13280000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr9:13278200-13280000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:13278200-13280000	Active TSS	Fetal Lung	lung
48	chr9:13278200-13280000	Active TSS	Placenta Amnion	Placenta Amnion
49	chr9:13278200-13280000	Active TSS	HepG2	liver
50	chr9:13278200-13280200	Active TSS	H9 Cell Line	embryonic stem cell

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