Variant report

Variant	rs1932041
Chromosome Location	chr6:45696775-45696776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16873528	1.00[AMR][1000 genomes]
rs1889594	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637581	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782664	0.84[AFR][1000 genomes]
rs60291404	1.00[AMR][1000 genomes]
rs73456748	1.00[AMR][1000 genomes]
rs73737477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45695000-45696800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:45695200-45697200	Enhancers	Hela-S3	cervix
3	chr6:45695600-45696800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:45695600-45696800	Enhancers	Fetal Muscle Leg	muscle
5	chr6:45695600-45697200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:45695800-45696800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:45695800-45696800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:45695800-45696800	Enhancers	HMEC	breast
9	chr6:45695800-45697000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:45696400-45696800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:45696400-45696800	Enhancers	Fetal Lung	lung
12	chr6:45696400-45696800	Enhancers	Fetal Stomach	stomach
13	chr6:45696400-45696800	Enhancers	NHEK	skin
14	chr6:45696600-45700400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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