Variant report

Variant	rs16873528
Chromosome Location	chr6:45552819-45552820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45533723..45535563-chr6:45552658..45554257,2	MCF-7	breast:
2	chr6:45529109..45532047-chr6:45550520..45552903,2	MCF-7	breast:
3	chr6:45552449..45555221-chr6:45555644..45558229,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16873640	1.00[EUR][1000 genomes]
rs16873657	1.00[EUR][1000 genomes]
rs16873716	1.00[EUR][1000 genomes]
rs16873720	1.00[EUR][1000 genomes]
rs1889594	1.00[AMR][1000 genomes]
rs1932041	1.00[AMR][1000 genomes]
rs2637579	1.00[AMR][1000 genomes]
rs2637581	1.00[AMR][1000 genomes]
rs56066829	1.00[EUR][1000 genomes]
rs60291404	1.00[AMR][1000 genomes]
rs60588484	1.00[EUR][1000 genomes]
rs61524574	1.00[EUR][1000 genomes]
rs73450785	1.00[EUR][1000 genomes]
rs73735438	1.00[EUR][1000 genomes]
rs73735439	1.00[EUR][1000 genomes]
rs73735440	1.00[EUR][1000 genomes]
rs73735443	1.00[EUR][1000 genomes]
rs73735444	1.00[EUR][1000 genomes]
rs73735445	1.00[EUR][1000 genomes]
rs73735446	1.00[EUR][1000 genomes]
rs73737477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45537400-45559000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:45542800-45554000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:45546600-45554200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:45551000-45554800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:45551200-45554000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:45551200-45556000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:45551400-45554200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:45551600-45553800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:45551600-45553800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:45551600-45554000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:45551600-45554200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:45551600-45554200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:45551600-45554200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:45551600-45557800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:45551800-45553800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:45551800-45554000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:45551800-45554200	Enhancers	Primary T cells from cord blood	blood
18	chr6:45552000-45553600	Enhancers	Dnd41	blood
19	chr6:45552800-45553000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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