Variant report

Variant	rs73735446
Chromosome Location	chr6:45680848-45680849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45388351..45392469-chr6:45677058..45681345,6	MCF-7	breast:
2	chr6:45521508..45523893-chr6:45680263..45683412,3	MCF-7	breast:
3	chr6:45643267..45645325-chr6:45679837..45682530,2	MCF-7	breast:
4	chr6:45576668..45578877-chr6:45680174..45683422,3	MCF-7	breast:
5	chr6:45386507..45391476-chr6:45680273..45684660,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271857	Chromatin interaction
ENSG00000124813	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16873528	1.00[EUR][1000 genomes]
rs16873640	1.00[EUR][1000 genomes]
rs16873657	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873716	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873720	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56066829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60588484	1.00[EUR][1000 genomes]
rs61524574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73450785	1.00[EUR][1000 genomes]
rs73735438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735439	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735440	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735443	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463104	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45677400-45682200	Weak transcription	HMEC	breast
2	chr6:45678000-45683400	Enhancers	HSMM	muscle
3	chr6:45678200-45682000	Weak transcription	NHEK	skin
4	chr6:45678400-45682200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:45678400-45682400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:45678600-45681600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:45678600-45681800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:45678600-45682200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:45678600-45682200	Weak transcription	Liver	Liver
10	chr6:45678800-45681600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:45678800-45681600	Weak transcription	HSMMtube	muscle
12	chr6:45678800-45681800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:45678800-45681800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:45678800-45681800	Weak transcription	NH-A	brain
15	chr6:45678800-45682000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:45678800-45682000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:45678800-45682000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:45678800-45682000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:45678800-45682000	Weak transcription	Fetal Thymus	thymus
20	chr6:45678800-45682000	Weak transcription	NHLF	lung
21	chr6:45678800-45682400	Weak transcription	Adipose Nuclei	Adipose
22	chr6:45678800-45683200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:45679000-45681800	Weak transcription	Osteobl	bone
24	chr6:45679000-45683200	Enhancers	Hela-S3	cervix
25	chr6:45679200-45681600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:45679200-45681600	Weak transcription	GM12878-XiMat	blood
27	chr6:45679600-45682000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:45680000-45681000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:45680000-45682600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr6:45680200-45681200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr6:45680200-45684800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:45680400-45681000	Enhancers	NHDF-Ad	bronchial
33	chr6:45680400-45681200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr6:45680600-45681800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:45680600-45681800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:45680600-45682000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:45680600-45682200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:45680800-45682000	Weak transcription	Primary hematopoietic stem cells	blood

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