Variant report

Variant	rs73735445
Chromosome Location	chr6:45679597-45679598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45386524..45392794-chr6:45676366..45680002,8	MCF-7	breast:
2	chr6:45388351..45392469-chr6:45677058..45681345,6	MCF-7	breast:
3	chr6:45677669..45679804-chr6:45680986..45684570,3	MCF-7	breast:
4	chr6:45575303..45577184-chr6:45677286..45680162,2	MCF-7	breast:
5	chr6:45628014..45630529-chr6:45677835..45679691,2	MCF-7	breast:
6	chr6:45623550..45625592-chr6:45678620..45680688,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271857	Chromatin interaction
ENSG00000124813	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16873528	1.00[EUR][1000 genomes]
rs16873640	1.00[EUR][1000 genomes]
rs16873657	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873716	1.00[EUR][1000 genomes]
rs16873720	1.00[EUR][1000 genomes]
rs56066829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60588484	1.00[EUR][1000 genomes]
rs61524574	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73450785	1.00[EUR][1000 genomes]
rs73735438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735439	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735440	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735444	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735446	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45677400-45682200	Weak transcription	HMEC	breast
2	chr6:45678000-45679600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:45678000-45683400	Enhancers	HSMM	muscle
4	chr6:45678200-45682000	Weak transcription	NHEK	skin
5	chr6:45678400-45682200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:45678400-45682400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:45678600-45679600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:45678600-45680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:45678600-45680200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:45678600-45680400	Weak transcription	NHDF-Ad	bronchial
11	chr6:45678600-45681600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:45678600-45681800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:45678600-45682200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:45678600-45682200	Weak transcription	Liver	Liver
15	chr6:45678800-45680200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:45678800-45681600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:45678800-45681600	Weak transcription	HSMMtube	muscle
18	chr6:45678800-45681800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:45678800-45681800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:45678800-45681800	Weak transcription	NH-A	brain
21	chr6:45678800-45682000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:45678800-45682000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:45678800-45682000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:45678800-45682000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:45678800-45682000	Weak transcription	Fetal Thymus	thymus
26	chr6:45678800-45682000	Weak transcription	NHLF	lung
27	chr6:45678800-45682400	Weak transcription	Adipose Nuclei	Adipose
28	chr6:45678800-45683200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:45679000-45680000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:45679000-45680200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:45679000-45680200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:45679000-45681800	Weak transcription	Osteobl	bone
33	chr6:45679000-45683200	Enhancers	Hela-S3	cervix
34	chr6:45679200-45681600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:45679200-45681600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links