Variant report

Variant	rs56066829
Chromosome Location	chr6:45676906-45676907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16873528	1.00[EUR][1000 genomes]
rs16873640	1.00[EUR][1000 genomes]
rs16873657	1.00[EUR][1000 genomes]
rs16873716	1.00[EUR][1000 genomes]
rs16873720	1.00[EUR][1000 genomes]
rs60588484	1.00[EUR][1000 genomes]
rs61524574	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73450785	1.00[EUR][1000 genomes]
rs73735438	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735439	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735440	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735443	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735444	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45668000-45678000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:45671000-45678000	Weak transcription	NHLF	lung
3	chr6:45671200-45678000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:45672400-45677600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:45672400-45678000	Weak transcription	NHDF-Ad	bronchial
6	chr6:45672600-45677800	Weak transcription	Osteobl	bone
7	chr6:45672600-45678000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:45673600-45677600	Enhancers	GM12878-XiMat	blood
9	chr6:45674400-45678200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:45675400-45677600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:45675400-45677800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:45675600-45678000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:45675600-45678000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:45675800-45678000	Enhancers	Hela-S3	cervix
15	chr6:45676200-45677800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:45676600-45677800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:45676800-45678000	Weak transcription	NH-A	brain
18	chr6:45676800-45679000	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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