Variant report

Variant	rs61524574
Chromosome Location	chr6:45670775-45670776
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16873528	1.00[EUR][1000 genomes]
rs16873640	1.00[EUR][1000 genomes]
rs16873657	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873716	1.00[EUR][1000 genomes]
rs16873720	1.00[EUR][1000 genomes]
rs56066829	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60588484	1.00[EUR][1000 genomes]
rs73450785	1.00[EUR][1000 genomes]
rs73735438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735444	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735445	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735446	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45664200-45672400	Enhancers	Hela-S3	cervix
2	chr6:45666000-45671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:45666200-45672000	Weak transcription	HSMM	muscle
4	chr6:45666400-45670800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:45667400-45671800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:45668000-45672200	Weak transcription	HSMMtube	muscle
7	chr6:45668000-45678000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:45669400-45670800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:45669400-45672400	Enhancers	NHDF-Ad	bronchial
10	chr6:45669600-45672400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:45670000-45671400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:45670000-45672400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:45670000-45672400	Enhancers	NHEK	skin
14	chr6:45670000-45672600	Enhancers	HMEC	breast
15	chr6:45670200-45671000	Enhancers	NHLF	lung
16	chr6:45670200-45672400	Enhancers	NH-A	brain
17	chr6:45670600-45671600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:45670600-45671600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:45670600-45672600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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