Variant report

rSNPs within LD-proxies of this variant (count:15)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45664200-45672400	Enhancers	Hela-S3	cervix
2	chr6:45666000-45670000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:45666000-45670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:45666000-45671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:45666200-45670200	Weak transcription	NHLF	lung
6	chr6:45666200-45670600	Weak transcription	Osteobl	bone
7	chr6:45666200-45672000	Weak transcription	HSMM	muscle
8	chr6:45666400-45670800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:45666600-45669600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:45666600-45670000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:45666600-45670000	Weak transcription	HMEC	breast
12	chr6:45666600-45670000	Weak transcription	NHEK	skin
13	chr6:45666600-45670200	Weak transcription	NH-A	brain
14	chr6:45666600-45670600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:45667000-45669400	Weak transcription	NHDF-Ad	bronchial
16	chr6:45667400-45671800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:45668000-45672200	Weak transcription	HSMMtube	muscle
18	chr6:45668000-45678000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:45668400-45669400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:45668400-45669400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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