Variant report

Variant	rs16873716
Chromosome Location	chr6:45692447-45692448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16873528	1.00[EUR][1000 genomes]
rs16873640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873657	1.00[EUR][1000 genomes]
rs16873720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56066829	1.00[EUR][1000 genomes]
rs60588484	1.00[EUR][1000 genomes]
rs61524574	1.00[EUR][1000 genomes]
rs73450785	1.00[EUR][1000 genomes]
rs73735438	1.00[EUR][1000 genomes]
rs73735439	1.00[EUR][1000 genomes]
rs73735440	1.00[EUR][1000 genomes]
rs73735443	1.00[EUR][1000 genomes]
rs73735444	1.00[EUR][1000 genomes]
rs73735445	1.00[EUR][1000 genomes]
rs73735446	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45692200-45692800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:45692200-45692800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:45692200-45692800	Enhancers	NHEK	skin
4	chr6:45692200-45693000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:45692200-45693000	Enhancers	NHDF-Ad	bronchial
6	chr6:45692400-45692600	Enhancers	Fetal Muscle Leg	muscle
7	chr6:45692400-45692800	Enhancers	Fetal Heart	heart
8	chr6:45692400-45692800	Enhancers	Fetal Lung	lung
9	chr6:45692400-45692800	Enhancers	HMEC	breast
10	chr6:45692400-45692800	Enhancers	HSMMtube	muscle
11	chr6:45692400-45692800	Enhancers	Osteobl	bone
12	chr6:45692400-45693000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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