Variant report

Variant	rs2637581
Chromosome Location	chr6:45694863-45694864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16873528	1.00[AMR][1000 genomes]
rs1889594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1932041	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637579	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782664	0.86[AFR][1000 genomes]
rs60291404	1.00[AMR][1000 genomes]
rs73456748	1.00[AMR][1000 genomes]
rs73737477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45692600-45695600	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:45692800-45695000	Weak transcription	Fetal Heart	heart
3	chr6:45692800-45695600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:45692800-45695800	Weak transcription	HMEC	breast
5	chr6:45692800-45696400	Weak transcription	Fetal Lung	lung
6	chr6:45692800-45696400	Weak transcription	HSMMtube	muscle
7	chr6:45692800-45696400	Weak transcription	NHEK	skin
8	chr6:45692800-45696400	Weak transcription	Osteobl	bone
9	chr6:45693000-45695000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:45693000-45695200	Weak transcription	Hela-S3	cervix
11	chr6:45693000-45696400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:45694400-45696400	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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