Variant report

Variant	rs73737477
Chromosome Location	chr6:45535374-45535375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45531563..45533620-chr6:45534711..45536211,2	MCF-7	breast:
2	chr6:45533723..45535563-chr6:45552658..45554257,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUPT3H-1	chr6:45535185-45535428	XLOC_005737
2	lnc-SUPT3H-1	chr6:45535185-45535424	XLOC_005737
3	lnc-SUPT3H-1	chr6:45535185-45535424	XLOC_005737
4	lnc-SUPT3H-1	chr6:45535185-45535424	XLOC_005737
5	lnc-SUPT3H-1	chr6:45535185-45535424	XLOC_005737
6	lnc-SUPT3H-1	chr6:45534240-45535428	NONHSAT112988

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16873528	1.00[AMR][1000 genomes]
rs1889594	1.00[AMR][1000 genomes]
rs1932041	1.00[AMR][1000 genomes]
rs2637579	1.00[AMR][1000 genomes]
rs2637581	1.00[AMR][1000 genomes]
rs60291404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv603009	chr6:45530471-45543530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv462940	chr6:45532214-45545975	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv603010	chr6:45532214-45545975	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45522000-45536800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:45524800-45537000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:45531000-45536200	Weak transcription	Psoas Muscle	Psoas
4	chr6:45531000-45537000	Weak transcription	Ovary	ovary
5	chr6:45531000-45537200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:45532400-45537000	Weak transcription	Fetal Heart	heart
7	chr6:45532600-45536200	Weak transcription	Left Ventricle	heart
8	chr6:45532800-45535600	Weak transcription	Right Atrium	heart
9	chr6:45533800-45535400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:45533800-45537400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:45534000-45537600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:45534200-45535400	Enhancers	HepG2	liver
13	chr6:45534200-45535400	Enhancers	NH-A	brain
14	chr6:45534200-45537800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:45534200-45538000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:45534400-45535400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:45534400-45535400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:45534400-45537600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:45534400-45538000	Enhancers	HMEC	breast
20	chr6:45534600-45535400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:45534600-45535400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:45534600-45537800	Enhancers	NHEK	skin
23	chr6:45534800-45535400	Enhancers	HSMMtube	muscle
24	chr6:45534800-45536000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:45535000-45536400	Weak transcription	Esophagus	oesophagus
26	chr6:45535000-45537000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:45535000-45537000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:45535000-45537200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:45535200-45537000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:45535200-45537000	Weak transcription	HSMM	muscle

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