Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10791495	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs10791496	0.85[CHB][hapmap]
rs10791504	0.81[CHB][hapmap]
rs10895142	0.81[CHB][hapmap]
rs11224829	0.81[CHB][hapmap]
rs11224852	0.87[JPT][hapmap]
rs11224853	0.81[CHB][hapmap]
rs11224855	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11224881	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs12787882	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17134809	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs36144256	0.81[EUR][1000 genomes]
rs4237603	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4326755	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4331057	0.81[CHB][hapmap]
rs4331058	0.85[CHB][hapmap]
rs4408275	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4462305	0.81[CHB][hapmap]
rs4469858	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs4492784	0.85[CHB][hapmap]
rs4503499	0.81[CHB][hapmap]
rs4531428	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs4603271	0.87[ASN][1000 genomes]
rs4614409	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4617552	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4754012	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4754774	0.84[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs4754776	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs4754777	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7927579	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7936514	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs7938043	0.97[EUR][1000 genomes]
rs9326314	0.81[CHB][hapmap]
rs9888232	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2761704	chr11:101514325-101559016	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101522200-101525400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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