Variant report

Variant	rs1942842
Chromosome Location	chr11:101082139-101082140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10219161	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11224621	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11224633	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11224645	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11224653	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11224659	0.84[EUR][1000 genomes]
rs11224660	0.84[EUR][1000 genomes]
rs11600884	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11604690	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11607105	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12146616	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12284366	0.82[EUR][1000 genomes]
rs12365765	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12366080	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17737150	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1942837	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1942841	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35121324	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61892294	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61892295	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892342	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61892345	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61892346	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61892347	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61892349	0.84[EUR][1000 genomes]
rs61892351	0.81[EUR][1000 genomes]
rs7110503	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7112963	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7117548	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7122562	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7130227	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs717398	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72976202	0.88[EUR][1000 genomes]
rs7937207	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7940817	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7942926	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101070800-101082200	Weak transcription	Aorta	Aorta
2	chr11:101081200-101082200	Weak transcription	Ovary	ovary
3	chr11:101082000-101082600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links