Variant report

Variant	rs61892347
Chromosome Location	chr11:101114556-101114557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101000132..101002979-chr11:101113314..101115019,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10219161	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11224621	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11224633	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224645	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11224653	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11224659	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11224660	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11600884	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11604690	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11607105	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12146616	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12284366	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12365765	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12366080	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17737150	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1942837	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1942841	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1942842	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35121324	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56195619	0.87[EUR][1000 genomes]
rs61890775	0.85[EUR][1000 genomes]
rs61892294	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61892295	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61892342	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61892345	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61892346	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892349	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61892351	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7110503	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7112963	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7114792	0.88[EUR][1000 genomes]
rs7117548	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7122562	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7130227	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs717398	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72976202	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7927194	0.88[EUR][1000 genomes]
rs7937207	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7940817	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7942926	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101112200-101115600	Weak transcription	Ovary	ovary

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