Variant report

Variant	rs717398
Chromosome Location	chr11:101056923-101056924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10219161	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224621	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224633	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11224645	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224653	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224659	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11224660	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11600884	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11604690	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11607105	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12146616	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12284366	0.84[EUR][1000 genomes]
rs12365765	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12366080	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17737150	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1942837	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1942841	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1942842	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35121324	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61892294	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61892295	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61892342	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61892345	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61892346	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61892347	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61892349	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61892351	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7110503	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7112963	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7114792	0.80[EUR][1000 genomes]
rs7117548	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7122562	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7130227	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72976202	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7927194	0.80[EUR][1000 genomes]
rs7937207	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7940817	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7942926	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
2	chr11:101046600-101058600	Weak transcription	Aorta	Aorta
3	chr11:101052000-101059200	Weak transcription	Ovary	ovary
4	chr11:101054800-101071000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:101055400-101057000	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links