Variant report

Variant	rs7117548
Chromosome Location	chr11:101085503-101085504
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10219161	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224621	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11224633	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11224645	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224653	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11224659	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11224660	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11600884	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11604690	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11607105	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146616	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12284366	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12365765	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12366080	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17737150	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1942837	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1942841	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1942842	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35121324	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56195619	0.80[EUR][1000 genomes]
rs61892294	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892295	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61892342	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61892345	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61892346	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892347	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61892349	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61892351	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7110503	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112963	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7114792	0.81[EUR][1000 genomes]
rs7122562	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7130227	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs717398	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72976202	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7927194	0.81[EUR][1000 genomes]
rs7937207	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940817	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7942926	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101082600-101088000	Weak transcription	Aorta	Aorta
2	chr11:101082600-101095000	Weak transcription	Ovary	ovary
3	chr11:101085000-101085800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:101085200-101085600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:101085200-101085600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:101085200-101085800	Enhancers	NHEK	skin

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