Variant report

Variant	rs56195619
Chromosome Location	chr11:101151861-101151862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10219161	0.87[EUR][1000 genomes]
rs11224633	0.80[EUR][1000 genomes]
rs11224645	0.84[EUR][1000 genomes]
rs11224653	0.87[EUR][1000 genomes]
rs11224659	0.94[EUR][1000 genomes]
rs11224660	0.94[EUR][1000 genomes]
rs11600884	0.81[EUR][1000 genomes]
rs11607105	0.80[EUR][1000 genomes]
rs12284366	0.95[EUR][1000 genomes]
rs17737150	0.81[EUR][1000 genomes]
rs1942837	0.80[EUR][1000 genomes]
rs1942841	0.80[EUR][1000 genomes]
rs61890775	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61892342	0.84[EUR][1000 genomes]
rs61892345	0.82[EUR][1000 genomes]
rs61892346	0.84[EUR][1000 genomes]
rs61892347	0.87[EUR][1000 genomes]
rs61892349	0.94[EUR][1000 genomes]
rs61892351	0.93[EUR][1000 genomes]
rs7110503	0.80[EUR][1000 genomes]
rs7112963	0.81[EUR][1000 genomes]
rs7114792	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7117548	0.80[EUR][1000 genomes]
rs7122562	0.84[EUR][1000 genomes]
rs7130227	0.85[EUR][1000 genomes]
rs72976202	0.87[EUR][1000 genomes]
rs7927194	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7937207	0.80[EUR][1000 genomes]
rs7942926	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101126400-101169400	Weak transcription	Ovary	ovary
2	chr11:101141000-101157400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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