Variant report

Variant	rs1946745
Chromosome Location	chr8:35522772-35522773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13251122	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs13266983	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1439162	0.90[AMR][1000 genomes]
rs1866484	0.90[AMR][1000 genomes]
rs2918964	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2918965	0.95[AMR][1000 genomes]
rs2918973	0.95[AMR][1000 genomes]
rs2958252	0.83[AFR][1000 genomes]
rs2958253	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2958254	0.90[AMR][1000 genomes]
rs2958256	0.95[AMR][1000 genomes]
rs2958257	0.95[AMR][1000 genomes]
rs2978576	0.90[AMR][1000 genomes]
rs2978580	0.90[AMR][1000 genomes]
rs2978581	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2978583	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2978585	0.90[AMR][1000 genomes]
rs4481588	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4534130	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv6151	chr8:35513278-35525860	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35520000-35524000	Weak transcription	Fetal Lung	lung
2	chr8:35520200-35522800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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