Variant report

Variant	rs2958252
Chromosome Location	chr8:35463793-35463794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs13251122	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13266983	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1439155	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1439160	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1439162	0.92[EUR][1000 genomes]
rs1866484	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1898828	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1946745	0.83[AFR][1000 genomes]
rs2067700	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2099682	0.91[EUR][1000 genomes]
rs2579901	0.91[EUR][1000 genomes]
rs2579903	0.91[EUR][1000 genomes]
rs2579904	0.91[EUR][1000 genomes]
rs2589334	0.91[EUR][1000 genomes]
rs2589335	0.91[EUR][1000 genomes]
rs2589336	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2589339	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2589343	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2589346	0.91[EUR][1000 genomes]
rs2589351	0.91[EUR][1000 genomes]
rs2589352	0.91[EUR][1000 genomes]
rs2589746	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2589747	0.91[EUR][1000 genomes]
rs2589755	0.91[EUR][1000 genomes]
rs2589761	0.89[EUR][1000 genomes]
rs2589762	0.91[EUR][1000 genomes]
rs2589763	0.91[EUR][1000 genomes]
rs2918955	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2918956	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2918958	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2918959	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2918964	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2918965	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2918973	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2918976	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2958249	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2958251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2958253	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2958254	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2958256	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2958257	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2978406	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2978568	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2978569	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2978573	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978576	0.92[EUR][1000 genomes]
rs2978580	0.88[EUR][1000 genomes]
rs2978581	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2978583	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2978585	0.90[EUR][1000 genomes]
rs4481588	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4534130	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs750553	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35453600-35464200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:35463000-35464200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
3	chr8:35463200-35464600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr8:35463200-35465000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr8:35463400-35465000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr8:35463600-35463800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:35463600-35464400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr8:35463600-35464600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:35463600-35465600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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