Variant report

Variant	rs13266983
Chromosome Location	chr8:35493393-35493394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs13251122	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1439155	0.82[EUR][1000 genomes]
rs1439160	0.82[EUR][1000 genomes]
rs1439162	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1866484	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1898828	0.82[EUR][1000 genomes]
rs1946745	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2067700	0.82[EUR][1000 genomes]
rs2099682	0.82[EUR][1000 genomes]
rs2579901	0.82[EUR][1000 genomes]
rs2579903	0.82[EUR][1000 genomes]
rs2579904	0.82[EUR][1000 genomes]
rs2589334	0.82[EUR][1000 genomes]
rs2589335	0.82[EUR][1000 genomes]
rs2589336	0.81[EUR][1000 genomes]
rs2589343	0.82[EUR][1000 genomes]
rs2589346	0.82[EUR][1000 genomes]
rs2589351	0.82[EUR][1000 genomes]
rs2589352	0.82[EUR][1000 genomes]
rs2589746	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2589747	0.82[EUR][1000 genomes]
rs2589755	0.82[EUR][1000 genomes]
rs2589761	0.81[EUR][1000 genomes]
rs2589762	0.82[EUR][1000 genomes]
rs2589763	0.82[EUR][1000 genomes]
rs2918955	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2918956	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2918958	0.91[EUR][1000 genomes]
rs2918959	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2918964	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2918965	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2918973	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2918976	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2958249	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2958251	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2958252	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2958253	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2958254	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2958256	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2958257	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2978406	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2978567	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2978568	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2978569	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2978573	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2978576	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2978580	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2978581	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2978583	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2978585	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4481588	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4534130	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4739419	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35483600-35493800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:35486600-35494000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:35486800-35494200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:35489600-35494200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:35490000-35493800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:35490000-35494000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:35490000-35494400	Enhancers	Fetal Heart	heart
8	chr8:35490200-35493800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:35490400-35493800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:35490400-35493800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:35490600-35494400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:35492000-35499600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:35492600-35494000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:35492800-35495000	Enhancers	Colon Smooth Muscle	Colon
15	chr8:35493000-35495200	Enhancers	Rectal Smooth Muscle	rectum
16	chr8:35493200-35494200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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