Variant report

Variant	rs2958249
Chromosome Location	chr8:35452196-35452197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13251122	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13266983	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1439155	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1439160	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1439162	0.90[EUR][1000 genomes]
rs1866484	0.94[EUR][1000 genomes]
rs1898828	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2067700	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2099682	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2579901	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2579903	0.94[EUR][1000 genomes]
rs2579904	0.94[EUR][1000 genomes]
rs2589334	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589335	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589336	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2589339	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2589343	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589346	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589351	0.94[EUR][1000 genomes]
rs2589352	0.94[EUR][1000 genomes]
rs2589746	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589747	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589755	0.94[EUR][1000 genomes]
rs2589761	0.92[EUR][1000 genomes]
rs2589762	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2589763	0.94[EUR][1000 genomes]
rs2918955	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2918956	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2918958	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2918959	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2918964	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2918965	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2918973	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2918976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2958251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2958252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2958253	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2958254	0.88[EUR][1000 genomes]
rs2958256	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2958257	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2978406	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2978567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2978568	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2978569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2978573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2978576	0.90[EUR][1000 genomes]
rs2978580	0.85[EUR][1000 genomes]
rs2978581	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2978583	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2978585	0.87[EUR][1000 genomes]
rs4481588	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4534130	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35440800-35455200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:35441600-35463600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:35449600-35453200	Weak transcription	Fetal Brain Female	brain
4	chr8:35451000-35452200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr8:35451000-35453600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:35451000-35454800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:35451200-35452800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr8:35451200-35453200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:35451200-35453400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:35451200-35453400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:35451200-35453600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:35451200-35453600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:35451200-35453600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr8:35451800-35453200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:35451800-35458000	Weak transcription	Fetal Kidney	kidney
16	chr8:35452000-35452200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:35452000-35452400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:35452000-35453200	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links