Variant report

Variant	rs2918955
Chromosome Location	chr4:175487185-175487186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13251122	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13266983	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1439155	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1439160	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1439162	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866484	0.97[EUR][1000 genomes]
rs1898828	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2067700	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2099682	0.91[EUR][1000 genomes]
rs2579901	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2579903	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2579904	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589334	0.91[EUR][1000 genomes]
rs2589335	0.91[EUR][1000 genomes]
rs2589336	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589339	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589343	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2589346	0.91[EUR][1000 genomes]
rs2589351	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589352	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589746	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2589747	0.91[EUR][1000 genomes]
rs2589755	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589761	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589762	0.91[EUR][1000 genomes]
rs2589763	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2918956	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2918958	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2918959	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2918964	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2918965	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2918973	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2918976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2958249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2958251	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2958252	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2958253	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2958254	0.91[EUR][1000 genomes]
rs2958256	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2958257	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2978406	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2978567	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2978568	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2978569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2978573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2978576	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2978580	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2978581	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2978583	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2978585	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4481588	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4534130	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv881376	chr4:175466101-175513812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv880800	chr4:175476462-175513812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv881268	chr4:175476462-175513812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv881481	chr4:175476462-175515345	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv881192	chr4:175476462-175523073	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv880379	chr4:175479889-175513812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv881565	chr4:175479889-175515345	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv881297	chr4:175479889-175515940	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv880684	chr4:175479889-175523073	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2763412	chr4:175482525-175503770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv880403	chr4:175485318-175535392	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175485200-175490200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:175485400-175490200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:175485400-175490600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:175485600-175490200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:175485600-175490400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:175485600-175490400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:175485600-175490400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:175485600-175490600	Weak transcription	H9 Cell Line	embryonic stem cell

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