Variant report

Variant	rs1947136
Chromosome Location	chr6:55679959-55679960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485076	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1073472	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10807505	0.88[EUR][1000 genomes]
rs10948955	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1374551	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1447129	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs1470527	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs16887283	0.85[EUR][1000 genomes]
rs1947135	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2023522	0.88[EUR][1000 genomes]
rs2023523	0.88[EUR][1000 genomes]
rs3798830	0.88[EUR][1000 genomes]
rs3798836	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3823038	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs56191021	0.85[EUR][1000 genomes]
rs6459108	0.96[CEU][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes]
rs6914731	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6929620	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749016	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7749809	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7750450	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7752801	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7767441	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9296803	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367665	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9367667	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs9475428	0.92[CEU][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes]
rs9475429	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs966329	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv885910	chr6:55628283-55684300	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55670800-55688200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:55673800-55682600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:55676600-55683200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:55677000-55687800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:55677600-55681200	Weak transcription	Fetal Lung	lung
6	chr6:55678000-55681400	Weak transcription	Fetal Heart	heart

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