Variant report

Variant	rs9475429
Chromosome Location	chr6:55715102-55715103
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10485076	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs1073472	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs10807505	0.96[EUR][1000 genomes]
rs10948955	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs12215796	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs1374551	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1447129	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs1470527	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs16887283	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1947135	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1947136	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2023522	0.96[EUR][1000 genomes]
rs2023523	0.96[EUR][1000 genomes]
rs3798825	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3798830	0.96[EUR][1000 genomes]
rs3823038	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56191021	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6459108	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs6914731	0.86[EUR][1000 genomes]
rs6929620	0.81[CEU][hapmap]
rs7749016	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs7749809	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7750450	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7752801	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs7767441	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9296803	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs9367665	0.85[EUR][1000 genomes]
rs9367667	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs9475428	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9475432	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes]
rs966329	0.96[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55706600-55716000	Weak transcription	Hela-S3	cervix
2	chr6:55713600-55730200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:55714000-55733200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:55714200-55715200	Weak transcription	Fetal Heart	heart
5	chr6:55714200-55724600	Weak transcription	Fetal Lung	lung

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