Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10485076	0.85[CEU][hapmap]
rs1073472	0.85[CEU][hapmap]
rs10948955	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1374551	0.85[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447129	0.84[CEU][hapmap]
rs1470527	0.84[CEU][hapmap]
rs1947135	0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1947136	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798836	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6459108	0.85[CEU][hapmap];0.81[YRI][hapmap]
rs6914731	0.86[ASN][1000 genomes]
rs7749016	0.84[CEU][hapmap]
rs7749809	0.80[CEU][hapmap]
rs7750450	0.80[CEU][hapmap]
rs7752801	0.85[CEU][hapmap]
rs7767441	0.80[CEU][hapmap]
rs9296803	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367665	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9367667	0.85[CEU][hapmap]
rs9475428	0.80[CEU][hapmap];0.92[YRI][hapmap]
rs9475429	0.81[CEU][hapmap]
rs966329	0.85[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885909	chr6:55539010-55674338	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv885910	chr6:55628283-55684300	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv603164	chr6:55631762-55674338	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55618200-55672400	Weak transcription	Placenta	Placenta
2	chr6:55656200-55667600	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:55656400-55676400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:55656600-55668400	Weak transcription	Fetal Brain Male	brain
5	chr6:55657000-55666400	Weak transcription	Fetal Heart	heart
6	chr6:55658600-55666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:55659400-55666000	Weak transcription	Fetal Lung	lung
8	chr6:55661000-55666400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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