Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485076	0.88[EUR][1000 genomes]
rs1073472	0.88[EUR][1000 genomes]
rs10807505	0.88[EUR][1000 genomes]
rs10948955	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1374551	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1447129	0.88[EUR][1000 genomes]
rs1470527	0.88[EUR][1000 genomes]
rs16887283	0.86[EUR][1000 genomes]
rs1947135	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1947136	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2023522	0.88[EUR][1000 genomes]
rs2023523	0.88[EUR][1000 genomes]
rs3798830	0.88[EUR][1000 genomes]
rs3798836	0.85[ASN][1000 genomes]
rs3823038	0.84[EUR][1000 genomes]
rs56191021	0.86[EUR][1000 genomes]
rs6459108	0.88[EUR][1000 genomes]
rs6929620	0.86[ASN][1000 genomes]
rs7749016	0.88[EUR][1000 genomes]
rs7749809	0.86[EUR][1000 genomes]
rs7750450	0.86[EUR][1000 genomes]
rs7752801	0.88[EUR][1000 genomes]
rs7767441	0.86[EUR][1000 genomes]
rs9296803	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9367665	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9367667	0.88[EUR][1000 genomes]
rs9475428	0.86[EUR][1000 genomes]
rs9475429	0.86[EUR][1000 genomes]
rs966329	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv885910	chr6:55628283-55684300	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55670800-55688200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:55677000-55687800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:55681800-55686600	Weak transcription	Fetal Heart	heart
4	chr6:55682800-55683800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:55683000-55683800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:55683200-55688000	Weak transcription	Fetal Lung	lung
7	chr6:55683600-55684400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:55683600-55689200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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