Variant report

Variant	rs195411
Chromosome Location	chr6:37301117-37301118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37296478..37299221-chr6:37300461..37302140,2	K562	blood:
2	chr6:37300785..37302603-chr6:37307878..37309457,2	K562	blood:
3	chr6:37299695..37302500-chr6:37310796..37313153,2	K562	blood:
4	chr6:37295574..37298465-chr6:37299510..37301716,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1224294	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs149701	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs149717	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1756998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195401	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195749	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622894	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262921	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs376155	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs415941	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6912213	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521807	chr6:37295630-37305622	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37287200-37302000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:37288200-37301200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:37288600-37301600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37290600-37302800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:37291600-37303000	Weak transcription	Fetal Brain Male	brain
6	chr6:37292000-37308400	Weak transcription	Hela-S3	cervix
7	chr6:37292400-37302200	Weak transcription	A549	lung
8	chr6:37292400-37303600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:37292600-37303600	Weak transcription	HMEC	breast
10	chr6:37292600-37308400	Weak transcription	HSMM	muscle
11	chr6:37292800-37302400	Weak transcription	Fetal Heart	heart
12	chr6:37292800-37303400	Weak transcription	NHDF-Ad	bronchial
13	chr6:37292800-37307600	Weak transcription	Fetal Kidney	kidney
14	chr6:37293200-37302600	Weak transcription	Stomach Mucosa	stomach
15	chr6:37295400-37301400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:37296400-37301200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:37296600-37301600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:37296600-37302200	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:37296800-37301200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:37296800-37301200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:37296800-37301400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:37297000-37301200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:37297000-37301200	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:37297000-37301200	Strong transcription	Dnd41	blood
25	chr6:37297000-37301400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:37297000-37301400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr6:37297000-37301800	Strong transcription	Primary T cells from cord blood	blood
28	chr6:37297000-37302200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:37297000-37302200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:37297000-37302600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:37297200-37301200	Strong transcription	Primary hematopoietic stem cells	blood
32	chr6:37297200-37301200	Strong transcription	Stomach Smooth Muscle	stomach
33	chr6:37297200-37301200	Strong transcription	GM12878-XiMat	blood
34	chr6:37297200-37301200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:37297200-37301400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:37297200-37301400	Strong transcription	K562	blood
37	chr6:37297200-37301600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:37297200-37301600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr6:37297200-37302400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:37297200-37302400	Strong transcription	Fetal Thymus	thymus
41	chr6:37297400-37301200	Strong transcription	Adipose Nuclei	Adipose
42	chr6:37297600-37302200	Strong transcription	Thymus	Thymus
43	chr6:37298200-37301600	Strong transcription	Fetal Stomach	stomach
44	chr6:37298400-37301200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:37298400-37301200	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:37298400-37301200	Strong transcription	NHEK	skin
47	chr6:37298400-37301200	Strong transcription	Osteobl	bone
48	chr6:37298400-37301400	Strong transcription	NH-A	brain
49	chr6:37298600-37301200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr6:37298600-37301200	Strong transcription	Brain Anterior Caudate	brain

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