Variant report

Variant	rs2622894
Chromosome Location	chr6:37255856-37255857
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37250673..37254138-chr6:37255765..37259618,4	K562	blood:
2	chr6:37252085..37257421-chr6:37258046..37261866,6	K562	blood:
3	chr6:37255134..37256804-chr6:37259145..37261866,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1224294	1.00[AMR][1000 genomes]
rs149701	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs149717	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1756998	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195387	1.00[AMR][1000 genomes]
rs195401	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195404	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195411	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195749	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262921	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs376155	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs415941	1.00[AMR][1000 genomes]
rs61741804	1.00[AMR][1000 genomes]
rs61741805	1.00[AMR][1000 genomes]
rs6912213	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:37246000-37256600	Genic enhancers	Dnd41	blood
4	chr6:37246000-37259600	Weak transcription	Small Intestine	intestine
5	chr6:37246200-37256400	Strong transcription	HepG2	liver
6	chr6:37246400-37258000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:37246600-37256200	Strong transcription	Primary T cells from cord blood	blood
8	chr6:37246600-37256200	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:37246600-37256600	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:37246800-37256200	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr6:37246800-37256400	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr6:37246800-37263400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:37246800-37264600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:37246800-37266200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr6:37247000-37256400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:37247000-37258000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:37247000-37263800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:37247000-37264000	Strong transcription	Fetal Intestine Large	intestine
19	chr6:37247000-37264400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr6:37247000-37265800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:37247200-37256200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:37247200-37256800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:37247200-37263800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:37247600-37266000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:37248000-37263400	Strong transcription	Placenta	Placenta
26	chr6:37248200-37258200	Strong transcription	HSMM	muscle
27	chr6:37248200-37263400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:37248400-37257600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:37248600-37256200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:37249000-37256000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:37249400-37257800	Strong transcription	Primary hematopoietic stem cells	blood
32	chr6:37249600-37256000	Strong transcription	NH-A	brain
33	chr6:37249600-37257600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:37250000-37256600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:37250000-37261800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:37250200-37256200	Strong transcription	Osteobl	bone
37	chr6:37250200-37257600	Strong transcription	HUVEC	blood vessel
38	chr6:37250200-37267400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr6:37250200-37269800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr6:37250400-37262400	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr6:37250600-37256200	Strong transcription	K562	blood
42	chr6:37250600-37264400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
44	chr6:37251200-37257600	Weak transcription	Aorta	Aorta
45	chr6:37251400-37263800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:37252000-37264600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr6:37252000-37265200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:37252600-37256000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:37252600-37265600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:37252800-37257200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links