Variant report

Variant	rs6912213
Chromosome Location	chr6:37227886-37227887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr6:37227658-37228294	GM12878	blood:	n/a	n/a
2	TBP	chr6:37227773-37228230	GM12878	blood:	n/a	n/a
3	FOXM1	chr6:37227717-37228358	GM12878	blood:	n/a	n/a
4	ATF2	chr6:37226923-37228295	GM12878	blood:	n/a	n/a
5	MTA3	chr6:37227480-37228134	GM12878	blood:	n/a	n/a
6	NFATC1	chr6:37227837-37228574	GM12878	blood:	n/a	n/a
7	IRF1	chr6:37227335-37228163	K562	blood:	n/a	chr6:37228074-37228085 chr6:37228114-37228126 chr6:37227406-37227415 chr6:37228071-37228085 chr6:37227419-37227429
8	POLR2A	chr6:37227833-37228120	GM12892	blood:	n/a	n/a
9	PML	chr6:37227401-37228294	GM12878	blood:	n/a	n/a
10	BATF	chr6:37227849-37228169	GM12878	blood:	n/a	n/a
11	NFIC	chr6:37227765-37228567	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:37227813-37228130	GM12891	blood:	n/a	n/a
13	POLR2A	chr6:37227811-37228132	GM12892	blood:	n/a	n/a
14	RUNX3	chr6:37227808-37228180	GM12878	blood:	n/a	n/a
15	NFIC	chr6:37226935-37228734	GM12878	blood:	n/a	n/a
16	IKZF1	chr6:37227881-37228758	GM12878	blood:	n/a	n/a
17	RUNX3	chr6:37227787-37228620	GM12878	blood:	n/a	n/a
18	NFATC1	chr6:37227626-37228379	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:37227783-37228157	GM12891	blood:	n/a	n/a
20	POLR2A	chr6:37227603-37228169	GM12892	blood:	n/a	n/a
21	CHD1	chr6:37227360-37228078	GM12878	blood:	n/a	n/a
22	POLR2A	chr6:37227738-37228167	GM12878	blood:	n/a	n/a
23	FOXM1	chr6:37227660-37228585	GM12878	blood:	n/a	n/a
24	BATF	chr6:37227837-37228139	GM12878	blood:	n/a	n/a
25	STAT5A	chr6:37227831-37228200	GM12878	blood:	n/a	chr6:37228073-37228084
26	TAF1	chr6:37227863-37228192	GM12878	blood:	n/a	n/a
27	PML	chr6:37227878-37228095	GM12878	blood:	n/a	n/a
28	ATF2	chr6:37227826-37228233	GM12878	blood:	n/a	n/a
29	MEF2A	chr6:37227834-37228208	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37138226..37140193-chr6:37227015..37228524,2	K562	blood:
2	chr6:37040055..37042190-chr6:37226411..37229127,2	K562	blood:

Variant related genes	Relation type
TMEM217	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1224294	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs149701	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs149717	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1756998	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195387	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195401	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195404	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195749	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622894	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs262921	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs376155	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs415941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741804	1.00[AMR][1000 genomes]
rs61741805	1.00[AMR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226000-37228000	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr6:37226000-37228200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:37226200-37228600	Flanking Active TSS	Dnd41	blood
4	chr6:37226400-37228000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:37226400-37228000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:37226400-37229400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:37226400-37230200	Weak transcription	Left Ventricle	heart
8	chr6:37226400-37231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:37226400-37244000	Weak transcription	Gastric	stomach
10	chr6:37226400-37247200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37226600-37228000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:37226600-37228000	Enhancers	Adipose Nuclei	Adipose
14	chr6:37226600-37228000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:37226600-37228600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:37226600-37232000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:37226600-37232200	Weak transcription	Ovary	ovary
18	chr6:37226600-37232600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:37226600-37234400	Weak transcription	Fetal Intestine Small	intestine
20	chr6:37226600-37237000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:37226600-37237400	Weak transcription	Placenta	Placenta
22	chr6:37226600-37237400	Weak transcription	HSMM	muscle
23	chr6:37226600-37240200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:37226600-37240200	Weak transcription	Aorta	Aorta
25	chr6:37226600-37243000	Weak transcription	Pancreas	Pancrea
26	chr6:37226600-37247200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:37226600-37247200	Weak transcription	Esophagus	oesophagus
28	chr6:37226600-37250000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:37226800-37228000	Enhancers	Duodenum Mucosa	Duodenum
31	chr6:37226800-37230200	Weak transcription	Right Ventricle	heart
32	chr6:37226800-37230400	Weak transcription	Thymus	Thymus
33	chr6:37226800-37237400	Weak transcription	NHDF-Ad	bronchial
34	chr6:37226800-37247000	Weak transcription	HSMMtube	muscle
35	chr6:37227000-37228000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:37227000-37228000	Flanking Active TSS	GM12878-XiMat	blood
37	chr6:37227000-37228200	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr6:37227000-37228600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr6:37227000-37230400	Weak transcription	Fetal Brain Female	brain
40	chr6:37227000-37230400	Weak transcription	Small Intestine	intestine
41	chr6:37227000-37236800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:37227000-37237000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:37227000-37247200	Weak transcription	Right Atrium	heart
44	chr6:37227000-37250000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:37227200-37228000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr6:37227200-37228000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr6:37227200-37228000	Enhancers	Hela-S3	cervix
48	chr6:37227200-37228000	Flanking Active TSS	K562	blood
49	chr6:37227200-37228000	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr6:37227200-37229200	Enhancers	Primary T helper cells fromperipheralblood	blood

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