Variant report

Variant	rs61741805
Chromosome Location	chr6:37059331-37059332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1224294	1.00[AMR][1000 genomes]
rs1756998	1.00[AMR][1000 genomes]
rs195749	1.00[AMR][1000 genomes]
rs2622894	1.00[AMR][1000 genomes]
rs262921	1.00[AMR][1000 genomes]
rs376155	1.00[AMR][1000 genomes]
rs415941	1.00[AMR][1000 genomes]
rs61741804	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6912213	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv969392	chr6:37052594-37060796	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37045800-37060800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37051400-37060400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:37051600-37060600	Weak transcription	A549	lung
4	chr6:37051600-37063400	Weak transcription	Small Intestine	intestine
5	chr6:37051800-37060600	Weak transcription	Pancreas	Pancrea
6	chr6:37052200-37060600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:37052200-37070000	Weak transcription	Right Atrium	heart
8	chr6:37052800-37069800	Weak transcription	Ovary	ovary
9	chr6:37053200-37060400	Weak transcription	Fetal Intestine Small	intestine
10	chr6:37057000-37060400	Weak transcription	Fetal Intestine Large	intestine
11	chr6:37057400-37059400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:37057600-37060400	Weak transcription	Fetal Stomach	stomach
13	chr6:37057800-37059600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:37057800-37060600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:37057800-37061400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:37058000-37069000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:37058600-37060600	Enhancers	HepG2	liver
18	chr6:37059000-37059400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:37059000-37059600	Enhancers	Placenta	Placenta
20	chr6:37059000-37059800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:37059000-37060000	Enhancers	Hela-S3	cervix
22	chr6:37059200-37059800	Enhancers	K562	blood
23	chr6:37059200-37062200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:37059200-37062400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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