Variant report

Variant	rs262921
Chromosome Location	chr6:37226460-37226461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:37225327-37226476	GM12878	blood:	n/a	n/a
2	MTA3	chr6:37225261-37226763	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:37225354-37226520	GM15510	blood:	n/a	n/a
4	IKZF1	chr6:37225898-37226698	GM12878	blood:	n/a	n/a
5	NR2F2	chr6:37224840-37226930	K562	blood:	n/a	n/a
6	ZBTB7A	chr6:37225380-37226592	K562	blood:	n/a	chr6:37226312-37226323
7	CTCF	chr6:37225907-37226508	K562	blood:	n/a	n/a
8	ZBTB7A	chr6:37225518-37226521	ECC-1	luminal epithelium:	n/a	chr6:37226312-37226323
9	POLR2A	chr6:37224713-37227590	MCF10A-Er-Src	breast:	n/a	n/a
10	HCFC1	chr6:37224795-37226730	Hela-S3	cervix:	n/a	n/a
11	RELA	chr6:37225350-37226524	GM12891	blood:	n/a	n/a
12	POLR2A	chr6:37225226-37226613	GM12892	blood:	n/a	n/a
13	POLR2A	chr6:37225183-37227490	GM12891	blood:	n/a	n/a
14	POLR2A	chr6:37225394-37226637	GM12891	blood:	n/a	n/a
15	JUND	chr6:37224834-37226682	K562	blood:	n/a	n/a
16	POLR2A	chr6:37225360-37226763	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:37225421-37226579	K562	blood:	n/a	n/a
18	POLR2A	chr6:37225285-37226562	GM12892	blood:	n/a	n/a
19	HCFC1	chr6:37224953-37226616	K562	blood:	n/a	n/a
20	POLR2A	chr6:37225302-37226710	GM18505	blood:	n/a	n/a
21	NR2F2	chr6:37225195-37226554	K562	blood:	n/a	n/a
22	POLR2A	chr6:37225207-37226702	GM12892	blood:	n/a	n/a
23	POLR2A	chr6:37225366-37226585	K562	blood:	n/a	n/a
24	CHD1	chr6:37225560-37226518	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:37225292-37227558	HUVEC	blood vessel:	n/a	n/a
26	POLR2A	chr6:37225220-37226533	K562	blood:	n/a	n/a
27	POLR2A	chr6:37224784-37227469	IMR90	lung:	n/a	n/a
28	RELA	chr6:37225363-37226510	GM18951	blood:	n/a	n/a
29	EP300	chr6:37225827-37226463	GM12878	blood:	n/a	chr6:37225948-37225964
30	POLR2A	chr6:37225189-37226711	HUVEC	blood vessel:	n/a	n/a
31	MAZ	chr6:37225051-37226474	K562	blood:	n/a	n/a
32	IRF1	chr6:37225146-37226779	K562	blood:	n/a	chr6:37226546-37226560 chr6:37226545-37226559
33	NFIC	chr6:37225270-37226492	GM12878	blood:	n/a	n/a
34	TEAD4	chr6:37225162-37226578	K562	blood:	n/a	n/a
35	POLR2A	chr6:37225310-37226695	HUVEC	blood vessel:	n/a	n/a
36	MTA3	chr6:37225581-37226493	GM12878	blood:	n/a	n/a
37	CREB1	chr6:37225054-37226466	HepG2	liver:	n/a	n/a
38	REST	chr6:37225489-37226476	K562	blood:	n/a	n/a
39	IRF1	chr6:37225252-37226768	K562	blood:	n/a	chr6:37226546-37226560 chr6:37226545-37226559
40	POLR2A	chr6:37225261-37226536	PBDE	blood:	n/a	n/a
41	POLR2A	chr6:37225278-37226638	GM12878	blood:	n/a	n/a
42	UBTF	chr6:37225307-37226656	K562	blood:	n/a	n/a
43	CHD2	chr6:37225112-37226478	K562	blood:	n/a	n/a
44	CEBPB	chr6:37226323-37226717	K562	blood:	n/a	n/a
45	POLR2A	chr6:37225305-37226680	GM12891	blood:	n/a	n/a
46	MAZ	chr6:37225205-37226769	IMR90	lung:	n/a	chr6:37226473-37226483
47	POLR2A	chr6:37225290-37226720	GM12891	blood:	n/a	n/a
48	POLR2A	chr6:37225123-37226488	H1-hESC	embryonic stem cell:	n/a	n/a
49	TBL1XR1	chr6:37225030-37226560	K562	blood:	n/a	n/a
50	CTCF	chr6:37226320-37226470	HVMF	connective:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:36841093..36843369-chr6:37223969..37226953,2	K562	blood:
2	chr20:47894748..47895308-chr6:37226051..37226743,2	Hela-S3	cervix:
3	chr6:37040055..37042190-chr6:37226411..37229127,2	K562	blood:

Variant related genes	Relation type
TMEM217	TF binding region
ENSG00000124201	Chromatin interaction
ENSG00000177410	Chromatin interaction
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1224294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs149701	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs149717	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1756998	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195387	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195401	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195411	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs195749	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622894	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs376155	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs415941	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741804	1.00[AMR][1000 genomes]
rs61741805	1.00[AMR][1000 genomes]
rs6912213	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37224800-37226600	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr6:37224800-37227000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr6:37224800-37227000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:37224800-37227000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:37224800-37227200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:37224800-37227200	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:37224800-37227200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:37224800-37227400	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:37224800-37227600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:37225000-37226600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr6:37225000-37226600	Active TSS	H9 Cell Line	embryonic stem cell
12	chr6:37225000-37226600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:37225000-37226600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:37225000-37226600	Active TSS	Aorta	Aorta
15	chr6:37225000-37226600	Active TSS	Brain Germinal Matrix	brain
16	chr6:37225000-37226600	Active TSS	Esophagus	oesophagus
17	chr6:37225000-37226600	Active TSS	HSMMtube	muscle
18	chr6:37225000-37226800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:37225000-37227000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:37225000-37227400	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr6:37225000-37227600	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:37225200-37226600	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr6:37225200-37226600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:37225200-37226600	Active TSS	Fetal Muscle Trunk	muscle
25	chr6:37225200-37226600	Active TSS	Ovary	ovary
26	chr6:37225200-37226800	Bivalent/Poised TSS	HepG2	liver
27	chr6:37225200-37227000	Active TSS	GM12878-XiMat	blood
28	chr6:37225200-37227200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:37225200-37227400	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr6:37225200-37227400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:37225400-37226800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:37225800-37226600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
33	chr6:37225800-37226600	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr6:37225800-37227200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr6:37225800-37227200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:37225800-37227400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:37226000-37226600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr6:37226000-37226600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr6:37226000-37226600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:37226000-37226600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr6:37226000-37226600	Flanking Active TSS	Liver	Liver
42	chr6:37226000-37226600	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr6:37226000-37226600	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr6:37226000-37226600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr6:37226000-37226600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr6:37226000-37226600	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr6:37226000-37226600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr6:37226000-37226600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr6:37226000-37226800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:37226000-37226800	Flanking Active TSS	Fetal Brain Female	brain

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