Variant report

Variant	rs195413
Chromosome Location	chr6:37302075-37302076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37293681..37294200-chr6:37301446..37302191,2	K562	blood:
2	chr6:37296478..37299221-chr6:37300461..37302140,2	K562	blood:
3	chr6:37300785..37302603-chr6:37307878..37309457,2	K562	blood:
4	chr6:37299695..37302500-chr6:37310796..37313153,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM217-1	chr6:37301809-37302181	XLOC_005703

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12190959	0.82[CHB][hapmap]
rs12210895	0.82[CHB][hapmap]
rs149709	0.82[CHB][hapmap]
rs17572320	0.82[CHB][hapmap]
rs195369	0.87[EUR][1000 genomes]
rs195373	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195403	0.90[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs195405	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195407	0.88[EUR][1000 genomes]
rs195408	0.88[EUR][1000 genomes]
rs195409	0.90[CEU][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs195410	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195764	0.82[CHB][hapmap]
rs2295244	0.86[YRI][hapmap]
rs2622893	0.82[CHB][hapmap]
rs450134	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521807	chr6:37295630-37305622	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs195413	CTAG1A	trans	lymphoblastoid	seeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37290600-37302800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:37291600-37303000	Weak transcription	Fetal Brain Male	brain
3	chr6:37292000-37308400	Weak transcription	Hela-S3	cervix
4	chr6:37292400-37302200	Weak transcription	A549	lung
5	chr6:37292400-37303600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:37292600-37303600	Weak transcription	HMEC	breast
7	chr6:37292600-37308400	Weak transcription	HSMM	muscle
8	chr6:37292800-37302400	Weak transcription	Fetal Heart	heart
9	chr6:37292800-37303400	Weak transcription	NHDF-Ad	bronchial
10	chr6:37292800-37307600	Weak transcription	Fetal Kidney	kidney
11	chr6:37293200-37302600	Weak transcription	Stomach Mucosa	stomach
12	chr6:37296600-37302200	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:37297000-37302200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:37297000-37302200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:37297000-37302600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:37297200-37302400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:37297200-37302400	Strong transcription	Fetal Thymus	thymus
18	chr6:37297600-37302200	Strong transcription	Thymus	Thymus
19	chr6:37298600-37302200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:37298600-37302200	Strong transcription	Fetal Muscle Trunk	muscle
21	chr6:37298600-37302400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:37298800-37302200	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr6:37299800-37302600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:37299800-37303400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:37299800-37304600	Weak transcription	Small Intestine	intestine
26	chr6:37299800-37304600	Weak transcription	HSMMtube	muscle
27	chr6:37299800-37308200	Weak transcription	NHLF	lung
28	chr6:37300000-37302200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:37300000-37308000	Weak transcription	Brain Substantia Nigra	brain
30	chr6:37300200-37302200	Weak transcription	HepG2	liver
31	chr6:37300200-37302600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:37300400-37302200	Weak transcription	Liver	Liver
33	chr6:37300400-37303000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:37300400-37311200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:37300600-37302200	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:37300600-37302200	Weak transcription	Fetal Intestine Small	intestine
37	chr6:37300600-37302400	Weak transcription	Esophagus	oesophagus
38	chr6:37300600-37302400	Weak transcription	Gastric	stomach
39	chr6:37300600-37302800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:37300600-37302800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:37300600-37302800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:37300600-37303600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:37300600-37303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:37300600-37304200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:37300600-37307800	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:37300600-37307800	Weak transcription	Fetal Lung	lung
47	chr6:37300600-37308000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:37300600-37308400	Weak transcription	Aorta	Aorta
49	chr6:37300600-37309800	Weak transcription	Spleen	Spleen
50	chr6:37300800-37302600	Weak transcription	Brain Cingulate Gyrus	brain

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