Variant report

Variant	rs1965335
Chromosome Location	chr9:115504483-115504484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115503663..115506191-chr9:115515083..115517470,2	K562	blood:
2	chr9:115504195..115507115-chr9:115511394..115513870,3	K562	blood:
3	chr9:115498256..115499821-chr9:115502701..115504658,2	MCF-7	breast:
4	chr9:115504115..115508206-chr9:115509964..115513846,5	MCF-7	breast:
5	chr9:115503540..115508214-chr9:115510505..115515257,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226609	Chromatin interaction
ENSG00000148158	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10759584	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10817380	0.93[ASN][1000 genomes]
rs10817381	0.85[ASN][1000 genomes]
rs10817383	0.82[ASN][1000 genomes]
rs10981497	0.92[ASN][1000 genomes]
rs10981498	0.92[ASN][1000 genomes]
rs10981500	0.92[ASN][1000 genomes]
rs10981501	0.92[ASN][1000 genomes]
rs10981506	0.82[ASN][1000 genomes]
rs11790110	0.82[ASN][1000 genomes]
rs11792606	0.85[ASN][1000 genomes]
rs11794186	0.92[ASN][1000 genomes]
rs12235123	0.92[ASN][1000 genomes]
rs12685108	0.85[ASN][1000 genomes]
rs1361719	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1361720	0.85[ASN][1000 genomes]
rs1418410	0.82[EUR][1000 genomes]
rs1693411	0.83[EUR][1000 genomes]
rs1711739	0.82[EUR][1000 genomes]
rs1711744	0.81[EUR][1000 genomes]
rs1711746	0.83[EUR][1000 genomes]
rs1711747	0.83[EUR][1000 genomes]
rs1832890	0.93[EUR][1000 genomes]
rs1891403	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2153837	0.88[EUR][1000 genomes]
rs2185769	0.88[EUR][1000 genomes]
rs2645985	0.92[EUR][1000 genomes]
rs2645991	0.88[EUR][1000 genomes]
rs2645993	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2645994	0.90[EUR][1000 genomes]
rs2796028	0.88[EUR][1000 genomes]
rs2796031	0.88[EUR][1000 genomes]
rs2796035	0.89[EUR][1000 genomes]
rs2796037	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2935476	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2995805	0.80[EUR][1000 genomes]
rs4979148	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4979150	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4979153	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72768411	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534733	0.84[ASN][1000 genomes]
rs7859381	0.84[ASN][1000 genomes]
rs7862183	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7863952	0.92[ASN][1000 genomes]
rs7868830	0.84[EUR][1000 genomes]
rs786961	0.90[EUR][1000 genomes]
rs786965	0.85[EUR][1000 genomes]
rs786966	0.85[EUR][1000 genomes]
rs786967	0.82[EUR][1000 genomes]
rs786968	0.82[EUR][1000 genomes]
rs786969	0.82[EUR][1000 genomes]
rs786972	0.82[EUR][1000 genomes]
rs786977	0.88[EUR][1000 genomes]
rs786978	0.82[EUR][1000 genomes]
rs786979	0.80[EUR][1000 genomes]
rs786981	0.82[EUR][1000 genomes]
rs786983	0.82[EUR][1000 genomes]
rs7872308	0.81[EUR][1000 genomes]
rs787269	0.84[ASN][1000 genomes]
rs787270	0.84[ASN][1000 genomes]
rs787271	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs787272	0.84[ASN][1000 genomes]
rs787274	0.84[ASN][1000 genomes]
rs787275	0.84[ASN][1000 genomes]
rs787276	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs787278	0.90[EUR][1000 genomes]
rs787279	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787280	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787284	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs787291	0.94[EUR][1000 genomes]
rs787292	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs787295	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787297	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787298	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787301	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787303	0.96[EUR][1000 genomes]
rs813101	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9409123	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs947609	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv515899	chr9:115359049-115593870	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv34346	chr9:115360505-115581453	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1038999	chr9:115367078-115590950	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv2757350	chr9:115371397-115594108	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv471317	chr9:115375153-115558246	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	esv2761275	chr9:115376461-115590962	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1035169	chr9:115378282-115573581	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1049451	chr9:115378282-115585109	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1047374	chr9:115378282-115590950	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1038306	chr9:115379305-115595695	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv540194	chr9:115379305-115595695	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	nsv1051909	chr9:115379505-115588377	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv540195	chr9:115379505-115588377	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv915763	chr9:115379600-115588349	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
17	esv3693040	chr9:115381164-115578065	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
18	nsv515121	chr9:115383227-115585827	Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
19	nsv1044168	chr9:115383253-115585109	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
20	nsv1048327	chr9:115383253-115589646	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
21	nsv1044381	chr9:115383253-115590950	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
22	nsv442163	chr9:115383255-115590578	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	esv35051	chr9:115383332-115573581	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	esv34763	chr9:115383332-115581453	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv430090	chr9:115383445-115594445	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	nsv1041424	chr9:115389428-115590950	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
27	nsv1050186	chr9:115390759-115550453	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
28	nsv1047625	chr9:115390759-115587347	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
29	nsv540196	chr9:115390759-115587347	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
30	nsv615198	chr9:115397206-115589251	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
31	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
32	nsv1051808	chr9:115397891-115590950	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
33	esv34739	chr9:115409445-115581453	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
34	esv3339392	chr9:115504278-115504557	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115495200-115512400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:115502400-115511200	Weak transcription	Fetal Intestine Small	intestine
3	chr9:115502400-115512000	Weak transcription	Right Atrium	heart
4	chr9:115502800-115504800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:115502800-115511800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:115503200-115504800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:115503200-115505000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr9:115503400-115504800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:115503400-115505000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:115503400-115505200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:115503800-115504600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
12	chr9:115503800-115505000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:115503800-115506800	Enhancers	Primary B cells from cord blood	blood
14	chr9:115504000-115512000	Weak transcription	Spleen	Spleen
15	chr9:115504200-115510400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:115504200-115510800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr9:115504200-115511800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:115504400-115510600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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