The 2.0 version of rSNPBase

Variant report

Variant rs1972297
Chromosome Location chr2:85808573-85808574
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:85805800-85810400 Weak transcription Right Ventricle heart
2 chr2:85805800-85810800 Weak transcription Psoas Muscle Psoas
3 chr2:85806200-85810800 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr2:85806200-85811000 Weak transcription Colon Smooth Muscle Colon
5 chr2:85806200-85811800 Weak transcription A549 lung
6 chr2:85806400-85810800 Weak transcription Left Ventricle heart
7 chr2:85806600-85808600 Weak transcription Gastric stomach
8 chr2:85806800-85809000 Weak transcription Hela-S3 cervix
9 chr2:85806800-85810400 Strong transcription Sigmoid Colon Sigmoid Colon
10 chr2:85806800-85810600 Weak transcription HUVEC blood vessel
11 chr2:85806800-85811000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr2:85807000-85808800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr2:85807000-85810000 Genic enhancers Placenta Placenta
14 chr2:85807000-85810600 Weak transcription Fetal Kidney kidney
15 chr2:85807000-85810800 Weak transcription Brain Cingulate Gyrus brain
16 chr2:85807000-85811000 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr2:85807000-85811000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr2:85807000-85811400 Weak transcription Small Intestine intestine
19 chr2:85807200-85808800 Weak transcription Colonic Mucosa Colon
20 chr2:85807200-85810000 Strong transcription Primary T regulatory cells fromperipheralblood blood
21 chr2:85807200-85810400 Weak transcription NHLF lung
22 chr2:85807200-85810800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr2:85807200-85811000 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr2:85807400-85809200 Genic enhancers Primary T helper naive cells fromperipheralblood blood
25 chr2:85807400-85810000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
26 chr2:85807400-85810600 Weak transcription Muscle Satellite Cultured Cells --
27 chr2:85807400-85810800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr2:85807400-85810800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr2:85807400-85810800 Weak transcription Stomach Smooth Muscle stomach
30 chr2:85807400-85810800 Weak transcription HSMMtube muscle
31 chr2:85807400-85811200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr2:85807600-85808600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr2:85807600-85808600 Weak transcription Liver Liver
34 chr2:85807600-85808600 Weak transcription Fetal Intestine Large intestine
35 chr2:85807600-85808600 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr2:85807600-85808600 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr2:85807600-85808600 Weak transcription Spleen Spleen
38 chr2:85807600-85808600 Weak transcription GM12878-XiMat blood
39 chr2:85807600-85808600 Weak transcription HepG2 liver
40 chr2:85807600-85808600 Weak transcription K562 blood
41 chr2:85807600-85808800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr2:85807600-85808800 Weak transcription Fetal Stomach stomach
43 chr2:85807600-85809200 Weak transcription H1 Cell Line embryonic stem cell
44 chr2:85807600-85809400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
45 chr2:85807600-85809400 Weak transcription Brain Inferior Temporal Lobe brain
46 chr2:85807600-85809400 Weak transcription Brain Substantia Nigra brain
47 chr2:85807600-85809600 Weak transcription Adipose Nuclei Adipose
48 chr2:85807600-85809600 Weak transcription Brain Angular Gyrus brain
49 chr2:85807600-85810000 Strong transcription Primary B cells from peripheral blood blood
50 chr2:85807600-85810400 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015