Variant report

Variant	rs1972350
Chromosome Location	chr13:92558565-92558566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1330471	1.00[CHB][hapmap]
rs1536375	1.00[CHB][hapmap]
rs1854972	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs2352190	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap]
rs2352193	0.82[EUR][1000 genomes]
rs4630398	1.00[CHB][hapmap]
rs465219	1.00[CHB][hapmap]
rs4773651	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4773652	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6492565	1.00[CHB][hapmap]
rs7990703	1.00[CHB][hapmap]
rs7992791	1.00[CHB][hapmap]
rs7995130	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs9515990	0.90[CEU][hapmap]
rs9523438	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs9523439	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs9523441	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs9556130	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv900884	chr13:92548841-92595572	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv916705	chr13:92549110-92575114	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv983613	chr13:92550026-92567759	Active TSS Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3432500	chr13:92557351-92561249	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92558200-92558600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:92558400-92559000	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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