Variant report

Variant	rs4630398
Chromosome Location	chr13:92513439-92513440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1330471	1.00[CHB][hapmap]
rs1536375	1.00[CHB][hapmap]
rs1854972	0.94[GIH][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs1972350	1.00[CHB][hapmap]
rs2352190	1.00[CHB][hapmap]
rs4403912	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs465219	1.00[CHB][hapmap]
rs6492565	1.00[CHB][hapmap]
rs7990703	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7992791	1.00[CHB][hapmap]
rs7995130	0.94[GIH][hapmap];0.88[JPT][hapmap]
rs7995788	0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs9301756	0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs9523438	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs9523439	1.00[ASW][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs9523441	1.00[CHB][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv562721	chr13:92476602-92548841	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv900883	chr13:92481236-92602622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv983612	chr13:92492782-92519967	Enhancers	lncRNA	n/a	inside rSNPs	diseases
9	nsv976142	chr13:92492782-92567759	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv1041361	chr13:92495093-92519488	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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