Variant report

Variant	rs1980561
Chromosome Location	chr14:63386516-63386517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11846438	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs12431729	0.92[CEU][hapmap];0.88[GIH][hapmap];0.82[TSI][hapmap]
rs12433909	0.92[CEU][hapmap];0.80[JPT][hapmap]
rs12883703	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap]
rs243146	0.84[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap]
rs243148	0.83[CHB][hapmap]
rs243149	0.84[CEU][hapmap];0.86[CHD][hapmap]
rs243155	0.84[CEU][hapmap]
rs243156	0.84[CEU][hapmap]
rs243157	0.84[CEU][hapmap]
rs243159	0.84[CEU][hapmap]
rs243162	0.84[CEU][hapmap]
rs34487983	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6573467	0.83[CHB][hapmap];0.86[CHD][hapmap]
rs7155426	0.87[CEU][hapmap];0.85[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1980561	SYT16	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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