Variant report

Variant	rs243146
Chromosome Location	chr14:63305145-63305146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11846438	0.88[CEU][hapmap]
rs12431729	0.92[CEU][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs12883703	0.84[CEU][hapmap];0.86[CHD][hapmap]
rs171457	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs1956016	0.91[CEU][hapmap]
rs1980561	0.84[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap]
rs243148	0.92[CEU][hapmap];0.95[CHB][hapmap]
rs243149	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs243155	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs243156	1.00[CEU][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs243157	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs243159	1.00[CEU][hapmap]
rs243162	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs6573467	0.84[CHD][hapmap]
rs7155426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8012941	0.84[CEU][hapmap]
rs8021413	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs243146	SGPP1	cis	lymphoblastoid	seeQTL
rs243146	SYT16	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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