Variant report

Variant	rs243162
Chromosome Location	chr14:63292531-63292532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11846438	0.88[CEU][hapmap]
rs12431729	0.92[CEU][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs12883703	0.84[CEU][hapmap]
rs1956016	0.91[CEU][hapmap]
rs1980561	0.84[CEU][hapmap]
rs243146	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs243148	0.92[CEU][hapmap]
rs243149	1.00[CEU][hapmap];0.83[GIH][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs243155	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs243156	1.00[CEU][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs243157	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs243159	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs7155426	1.00[CEU][hapmap]
rs8012941	0.84[CEU][hapmap]
rs8021413	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs243162	SYT16	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links