Variant report

Variant	rs1981575
Chromosome Location	chr7:28051533-28051534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1024523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971085	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17156218	0.90[ASW][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes]
rs57357637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59022997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28031200-28054000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:28033000-28054400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:28033200-28057000	Weak transcription	HMEC	breast
4	chr7:28033400-28054200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:28035200-28057000	Weak transcription	Osteobl	bone
6	chr7:28035800-28058400	Weak transcription	Primary T cells from cord blood	blood
7	chr7:28036200-28054000	Weak transcription	Fetal Stomach	stomach
8	chr7:28036400-28052200	Weak transcription	Right Ventricle	heart
9	chr7:28037800-28055400	Weak transcription	Spleen	Spleen
10	chr7:28038600-28058800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:28039400-28055400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:28042600-28055600	Weak transcription	Aorta	Aorta
13	chr7:28045400-28052200	Weak transcription	Right Atrium	heart
14	chr7:28045400-28053000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr7:28045400-28053600	Weak transcription	Primary B cells from cord blood	blood
16	chr7:28045400-28054200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:28045400-28054200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr7:28045400-28056400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:28045400-28057600	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:28045400-28060000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr7:28045400-28076200	Weak transcription	Gastric	stomach
22	chr7:28045600-28057000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:28045600-28057000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:28045600-28060000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:28045800-28053800	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:28045800-28055400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:28045800-28055600	Weak transcription	HSMMtube	muscle
28	chr7:28046000-28052000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:28046000-28052000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr7:28046000-28052200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:28046000-28057000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:28046000-28058800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr7:28046000-28060000	Weak transcription	Ovary	ovary
34	chr7:28046400-28052200	Weak transcription	Psoas Muscle	Psoas
35	chr7:28047200-28052000	Weak transcription	Left Ventricle	heart
36	chr7:28047600-28054400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:28048000-28053800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:28048000-28057000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:28048800-28053800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:28051000-28053400	Enhancers	Rectal Smooth Muscle	rectum
41	chr7:28051000-28054000	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links