Variant report

Variant	rs57357637
Chromosome Location	chr7:28044690-28044691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1024523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971085	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17156218	0.91[AFR][1000 genomes]
rs1981575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59022997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28027200-28045800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:28031000-28044800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr7:28031000-28044800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:28031200-28054000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:28032000-28045000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:28033000-28049800	Weak transcription	Pancreas	Pancrea
7	chr7:28033000-28054400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:28033200-28057000	Weak transcription	HMEC	breast
9	chr7:28033400-28054200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:28035200-28045000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:28035200-28045000	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:28035200-28045200	Weak transcription	NH-A	brain
13	chr7:28035200-28057000	Weak transcription	Osteobl	bone
14	chr7:28035600-28045200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:28035800-28045000	Weak transcription	NHDF-Ad	bronchial
16	chr7:28035800-28058400	Weak transcription	Primary T cells from cord blood	blood
17	chr7:28036200-28054000	Weak transcription	Fetal Stomach	stomach
18	chr7:28036400-28052200	Weak transcription	Right Ventricle	heart
19	chr7:28037200-28045000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:28037800-28055400	Weak transcription	Spleen	Spleen
21	chr7:28038600-28058800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:28038800-28045000	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:28039000-28045000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:28039400-28055400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:28039600-28045000	Weak transcription	Brain Substantia Nigra	brain
26	chr7:28039800-28047400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:28040000-28045200	Weak transcription	Ovary	ovary
28	chr7:28041600-28045200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:28041800-28045000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr7:28042000-28045000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:28042400-28045000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:28042600-28045000	Weak transcription	Psoas Muscle	Psoas
33	chr7:28042600-28045000	Weak transcription	Right Atrium	heart
34	chr7:28042600-28045200	Weak transcription	Brain Anterior Caudate	brain
35	chr7:28042600-28045200	Weak transcription	Fetal Heart	heart
36	chr7:28042600-28055600	Weak transcription	Aorta	Aorta
37	chr7:28043800-28045600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:28044000-28045400	Strong transcription	Primary B cells from cord blood	blood
39	chr7:28044400-28045200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:28044400-28045400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:28044600-28045000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr7:28044600-28045200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr7:28044600-28045400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:28044600-28045600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:28044600-28045600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr7:28044600-28046000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:28044600-28046400	Enhancers	Colon Smooth Muscle	Colon

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