Variant report

Variant	rs73301389
Chromosome Location	chr7:28041201-28041202
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:28030867..28033555-chr7:28038535..28041461,2	MCF-7	breast:
2	chr7:28034445..28036501-chr7:28039878..28041382,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153814	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1024523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971085	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17156218	0.91[AFR][1000 genomes]
rs1981575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57357637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59022997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28017600-28042400	Weak transcription	Aorta	Aorta
2	chr7:28027200-28045800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:28031000-28044800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:28031000-28044800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:28031200-28054000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:28032000-28045000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:28032600-28041600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:28033000-28044600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:28033000-28049800	Weak transcription	Pancreas	Pancrea
10	chr7:28033000-28054400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:28033200-28057000	Weak transcription	HMEC	breast
12	chr7:28033400-28054200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:28034600-28044600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:28035200-28045000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:28035200-28045000	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:28035200-28045200	Weak transcription	NH-A	brain
17	chr7:28035200-28057000	Weak transcription	Osteobl	bone
18	chr7:28035600-28045200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:28035800-28045000	Weak transcription	NHDF-Ad	bronchial
20	chr7:28035800-28058400	Weak transcription	Primary T cells from cord blood	blood
21	chr7:28036200-28054000	Weak transcription	Fetal Stomach	stomach
22	chr7:28036400-28043800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:28036400-28044000	Weak transcription	Primary B cells from cord blood	blood
24	chr7:28036400-28052200	Weak transcription	Right Ventricle	heart
25	chr7:28037200-28045000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:28037800-28055400	Weak transcription	Spleen	Spleen
27	chr7:28038600-28042200	Weak transcription	Brain Anterior Caudate	brain
28	chr7:28038600-28058800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:28038800-28045000	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:28039000-28045000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:28039200-28041800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:28039400-28044600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:28039400-28055400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:28039600-28041400	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:28039600-28045000	Weak transcription	Brain Substantia Nigra	brain
36	chr7:28039800-28047400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:28040000-28045200	Weak transcription	Ovary	ovary
38	chr7:28041200-28041600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr7:28041200-28042000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:28041200-28042600	Enhancers	Fetal Heart	heart
41	chr7:28041200-28042600	Enhancers	Psoas Muscle	Psoas

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