Variant report

Variant	rs73302906
Chromosome Location	chr7:28060067-28060068
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27190168..27191138-chr7:28059599..28060184,3	K562	blood:

Variant related genes	Relation type
ENSG00000106006	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1024523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971085	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17156218	0.91[AFR][1000 genomes]
rs1981575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57357637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59022997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28045400-28076200	Weak transcription	Gastric	stomach
2	chr7:28054600-28060200	Weak transcription	Fetal Brain Female	brain
3	chr7:28054800-28062000	Enhancers	Colon Smooth Muscle	Colon
4	chr7:28054800-28073400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:28055600-28060600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:28055800-28072400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:28056200-28066400	Weak transcription	Esophagus	oesophagus
8	chr7:28056200-28072400	Weak transcription	Spleen	Spleen
9	chr7:28056400-28064400	Weak transcription	Aorta	Aorta
10	chr7:28056400-28072200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:28056600-28060600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:28056600-28060600	Enhancers	NHDF-Ad	bronchial
13	chr7:28057200-28061000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:28057400-28060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:28057800-28060400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:28057800-28060600	Enhancers	Rectal Smooth Muscle	rectum
17	chr7:28057800-28062000	Enhancers	Fetal Muscle Leg	muscle
18	chr7:28057800-28066000	Weak transcription	Brain Substantia Nigra	brain
19	chr7:28057800-28076200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:28058000-28060600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:28058000-28064400	Weak transcription	Right Atrium	heart
22	chr7:28058000-28065600	Weak transcription	Left Ventricle	heart
23	chr7:28058000-28076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:28058400-28060600	Enhancers	Brain Angular Gyrus	brain
25	chr7:28058600-28060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:28058600-28065600	Weak transcription	Primary T cells from cord blood	blood
27	chr7:28058800-28060400	Enhancers	Psoas Muscle	Psoas
28	chr7:28058800-28061600	Weak transcription	Primary B cells from cord blood	blood
29	chr7:28059000-28060200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:28059000-28060200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:28059000-28060400	Enhancers	Fetal Thymus	thymus
32	chr7:28059000-28069600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:28059200-28060400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr7:28059400-28060400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr7:28059400-28060600	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr7:28059600-28060400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr7:28059600-28060400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr7:28059600-28060400	Enhancers	H9 Cell Line	embryonic stem cell
39	chr7:28059600-28060400	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr7:28059600-28060400	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr7:28059600-28060400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr7:28059600-28060400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr7:28059600-28060400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr7:28059600-28060400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:28059600-28060400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr7:28059600-28060400	Enhancers	Brain Cingulate Gyrus	brain
47	chr7:28059600-28060400	Enhancers	NH-A	brain
48	chr7:28059600-28062200	Enhancers	HSMM	muscle
49	chr7:28059600-28064400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr7:28059800-28060200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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