Variant report

Variant	rs198669
Chromosome Location	chr6:143188746-143188747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143187698..143190335-chr6:143190930..143193098,2	K562	blood:
2	chr6:143178430..143180121-chr6:143186451..143188897,2	MCF-7	breast:
3	chr6:143186229..143189198-chr6:143189787..143193222,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs107118	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs107119	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13209704	0.81[ASN][1000 genomes]
rs13211716	0.85[ASN][1000 genomes]
rs198670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198671	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs198673	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs198674	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs198676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs198679	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198680	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2050311	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs28743065	0.83[ASN][1000 genomes]
rs4896599	0.89[ASN][1000 genomes]
rs5022324	0.82[ASN][1000 genomes]
rs67253362	0.85[ASN][1000 genomes]
rs6925325	0.87[ASN][1000 genomes]
rs728035	0.81[ASN][1000 genomes]
rs8180684	0.86[ASN][1000 genomes]
rs9321878	0.90[CHB][hapmap];0.83[YRI][hapmap];0.81[ASN][1000 genomes]
rs9376710	0.89[ASN][1000 genomes]
rs9390025	0.89[ASN][1000 genomes]
rs9390026	0.86[ASN][1000 genomes]
rs9496470	0.83[ASN][1000 genomes]
rs9496471	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143175600-143192000	Weak transcription	NHEK	skin
2	chr6:143175600-143192200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:143175600-143192800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:143176600-143192400	Weak transcription	NHDF-Ad	bronchial
5	chr6:143177000-143192200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:143178200-143192800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:143179600-143189200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:143179600-143191200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:143179600-143195000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:143179600-143195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:143180600-143193000	Weak transcription	Thymus	Thymus
12	chr6:143182200-143192800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:143183200-143191200	Weak transcription	Right Ventricle	heart
14	chr6:143184400-143189000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:143184600-143190200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:143184800-143189000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:143184800-143190200	Enhancers	Primary T cells from cord blood	blood
18	chr6:143184800-143190600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:143185200-143190200	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr6:143185600-143191000	Weak transcription	Left Ventricle	heart
21	chr6:143185600-143195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:143185600-143195000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:143185600-143195000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:143185800-143195800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:143186200-143189000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:143186600-143189600	Enhancers	Fetal Kidney	kidney
27	chr6:143186800-143189400	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr6:143186800-143189600	Enhancers	Primary B cells from peripheral blood	blood
29	chr6:143187000-143189400	Enhancers	Fetal Stomach	stomach
30	chr6:143187000-143190400	Enhancers	Fetal Heart	heart
31	chr6:143187000-143195800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:143187200-143188800	Weak transcription	Right Atrium	heart
33	chr6:143187200-143192800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:143187200-143193600	Weak transcription	Esophagus	oesophagus
35	chr6:143187200-143194200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr6:143187400-143188800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:143187400-143188800	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr6:143187600-143188800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr6:143187600-143193000	Weak transcription	Gastric	stomach
40	chr6:143187800-143188800	Enhancers	HSMM	muscle
41	chr6:143187800-143189800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr6:143188000-143189000	Enhancers	HepG2	liver
43	chr6:143188000-143189200	Enhancers	HUVEC	blood vessel
44	chr6:143188000-143189800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:143188000-143195200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:143188200-143189000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr6:143188200-143189000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr6:143188200-143189200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr6:143188200-143189800	Enhancers	Brain Angular Gyrus	brain
50	chr6:143188200-143189800	Enhancers	NHLF	lung

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